Scripts

A collection of scripts

Script	Description
bamCleaner.sh	Tidy up BAMs with invalid MAPQs
fileRenamer.sh	Rename sets of files
md5Checker.sh	Generate/verify MD5 checksums
s3Mover.sh	Copy files between local and S3 locations
sraFastqExtractor.sh	Extract FASTQs from prefetched SRA data
sraPrefetcher.sh	Prefetch SRA data from NCBI