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Gene body segments from Ensemble v108 on hg38 as GenomicRanges

Source: R/swissArmyKnife.R
gene_body_hg38.Rd

This genomic ranges contains the gene body segments (UTRs, Exons, Introns) for a single-transcript representation of Ensembl v108 genes on hg38.

Format

GRanges

Details

                     |  gene body schematic  |

[5 prime UTR]{Exon}<---Intron--->{Exon}<---Intron--->{Exon}[3 prime UTR]

The genes included had the following gene_biotype: protein_coding IG_C_gene,IG_D_gene,IG_J_gene,IG_V_gene, TR_C_gene,TR_D_gene,TR_J_gene,TR_V_gene lncRNA,miRNA

The transcript for protein-coding genes were determined using MANE Select & MANE Plus Clinical v1.4 annotations

Built from

  • Ensembl v108 GTF (https://ftp.ensembl.org/pub/release-108/gtf/homo_sapiens/Homo_sapiens.GRCh38.108.gtf.gz)

  • MANE v1.4 summary file (https://ftp.ncbi.nlm.nih.gov/refseq/MANE/MANE_human/release_1.4/MANE.GRCh38.v1.4.summary.txt.gz)