Diagnostic plot used for evaluating the performance of a JaBbA run

Creates a ggplot quilt-like plot for quickly evaluating the run performance and output graph characterisics of a JaBbA run.

Note, this function was designed to be run as part of the get_jabba_qc_diagnostic() workflow.

Usage

geom_jabba_stats(path_to_stats_dt, karyograph_dt)

Arguments

path_to_stats_dt: Path to the qc_stats.txt output from get_jabba_qc_diagnostic() run
karyograph_dt: Karyograph data.table from JaBbA run

Value

ggplot object

Examples

# Snippet from within the function `get_jabba_qc_diagnostic` that calls this geom
# diagnostic_plot <- geom_jabba_stats(
# path_to_stats_dt = paste0(jabba_workdir_path, "qc_stats.txt"),
# karyograph_dt = data.table::data.table("cn" = kar$segstats$cn,
#                                        "cnmle" = kar$segstats$cnmle))