Refactor seqinfo of GInteractions object for easy harmony

Single command to refactor all seq details of a GInteractions object to easily harmonize with any other genomic object. This function updates seqinfo for both anchor regions. By default, this package uses the autosome (1-22) and sex chromosomes (X,Y) of hg38, see gUtils::hg_seqlengths() Users can adjust this using the new_levels parameter.

Usage

gi_refactor_seqs(
  input_gi,
  new_levels = gUtils::hg_seqlengths(),
  sort_gi = TRUE
)

Arguments

input_gi

GInteractions object to refactor

new_levels

Named vector object used as the template for new seq details, see gUtils::hg_seqlengths() for example

sort_gi

Sort the output GInteractions object

Value

GInteractions object with updated seqinfo for both anchors